Errors in Installing Gromacs 4.5 in Windows 7 with Cygwin


Well, I am a Gromacs user, I am thinking about installing gromacs in windows, thus I could do some simple analysis more easily since my daliy work is all in Win 7 and SSH shell.

So I did some research online, and found some websites talking about this topic. But I didnit find a very clear way to do so. Then I tried to install Gromacs 4.5.5 by myself in my HP Prodesk, which has Win 7 64-bit OS with Cygwin.

Firstly, I tried to install FFTW 3.3.4, and things went quick well.
$ tar zxvf fftw-3.3.4.tar.gz
$ cd fftw-3.3.4
$ ./configure --prefix=/cygdrive/c/cygwin64/home/user/software/fftw-3.3.4 --enable-float --enable-shared
$ make
$ make install
So far, everything was okay.

Then, I downloaded Gromacs-4.5.5.tar.gz and copy to installation folder. And I unzip it and configure it, following by  "make -j 4", which gave me errors.

Thus I added some commands in ./configure step.
Later, I tried the following commands and still some error massage.

$./configure --disable-threads --with-fft=fftw3 CPPFLAGS="-I/cygdrive/c/cygwin64/home/user/software/fftw-3.3.4/include" LDFLAGS="-L/cygdrive/c/cygwin64/home/user/software/fftw-3.3.4/lib" --enable-float --disable-mpi --without-xml
$ make -j 4

The error massage is as following:
and 


After searching online, some people suggest should re-install fftw 3 with --enable-shared. But I tried this and failed again but with different error massages.

Comments

Popular posts from this blog

Fixing bugs in FF14SB port for Gromacs

Install new amber force fields ports in Gromacs

A step-by-step tutorial to perform PCA with Gromacs MD trajectory